Living systems

Living systems: habitats, species, reefs, forests and the models that follow them over time.

mandates

tools

  • 3Dtrees.earth tool draft

    Open platform from the GeoSense group at the University of Freiburg, with GFZ and partner institutes, where researchers upload laser scans of forests, have them processed into segmented trees, inspect them in the browser and download them.

    Living systems partly open dataopen participation

  • The Amazon Conservation Team and the AARIMO network use Vantor satellite imagery to find and track illegal gold-mining dredges along the Puré River in the Colombian Amazon and pass the findings to enforcement agencies.

    Living systemsPeople & society closed source

  • Geospatial foundation models from Google DeepMind (AlphaEarth Foundations, released as an embeddings dataset in Google Earth Engine) and from NASA with IBM (Prithvi Geospatial, open source on Hugging Face), for mapping and land-change tasks.

    Cities & placesLiving systems partly open sourcepartly open data

  • Circuitscape tool draft

    Open-source program that borrows algorithms from electronic circuit theory to predict how animals, plants and genes move across a landscape, treating every possible path at once; written in Julia.

    Living systems open sourceopen participation

  • Open single-class fish detector built by Filippo Varini and a group of contributors, trained on seventeen open datasets pooled into one; finds fish in underwater images and video from any camera or habitat.

    Living systemsWater open sourceopen dataopen participation

  • DeepReefMap tool draft

    Open-source pipeline from EPFL's ECEO lab that turns handheld underwater video of coral reefs into labelled 3D point clouds, orthomosaics and benthic cover statistics.

    Living systemsWater open source

  • Digital Reefs tool draft

    Project hosted at the Woods Hole Oceanographic Institution to build digital twins of coral reefs, so that the people who manage, conserve and restore reefs can explore a reef in 3D over time and test management options; a low-fidelity prototype exists.

    WaterLiving systems

  • DroneMegaDetector tool draft

    Open object detector from the ConservationDronesAI group, built on RF-DETR, that finds people, mammals and vehicles in drone imagery for wildlife surveys and counts.

    Living systemsSensory landscape open source

  • Molecular atlas that links microbial genes and transcripts from wetland and coastal sediments to field measurements of methane, nitrous oxide and sulfur, as evidence for blue-carbon projects; contacts are at Ecosphere Blue, whose MethaNet product is built on it.

    Living systemsWaterWeather & climate partly open data

  • Prototype web app by Hannah Nisonson of Esri's Applications Prototype Lab that links a 3D map of species observations in the San Bernardino National Forest with a 3D food-web graph, and shows what else is affected when a species is removed.

    Living systems

  • Pilot by The Nature Conservancy Argentina and the startup ReForest Latam that seeds native trees from drones on degraded farmland in Argentina's Gran Chaco.

    Living systems

  • Open-source detector from the Microsoft AI for Good Lab that finds wildlife in aerial and drone survey imagery; ships the OWL model family and extends MegaDetector from camera traps to overhead views.

    Living systems open sourcepartly open data

  • MethaNet tool draft

    Ecosphere Blue's planned assessment service for blue-carbon projects, rating project performance with methane-risk projections drawn from microbial genomic evidence in mangrove sediment.

    Living systemsWeather & climateWater

  • Mycosoft's hosted 3D globe inside its NatureOS platform; it shows environmental layers, the positions of the company's field sensors, historical playback and forecast context, drawing on its MINDEX database of species and observation records.

    Living systems

  • Open-source family of wildlife detection models and tools from Microsoft's AI for Good Lab; MegaDetector finds animals, people and vehicles in camera-trap images, and PyTorch-Wildlife is the framework that runs it and its siblings for aerial and acoustic data.

    Living systemsSensory landscape open sourcepartly open data

  • SPARROW tool draft

    Open-source, solar-powered edge device from Microsoft's AI for Good Lab that runs camera-trap and bioacoustic AI models on site and sends the results out by satellite or GSM, for biodiversity monitoring in remote places.

    Living systems open source

  • Caribbean project testing whether dense restored stands of elkhorn coral reduce wave energy and sediment movement along coasts, with sites in Jamaica, Barbados and Antigua & Barbuda; funded by the Caribbean Biodiversity Fund.

    Living systemsWater

  • Wildflow Coral tool draft

    Wildflow's platform for coral reefs, where divers upload footage and get georeferenced 3D models, orthomosaics and bathymetry for tracking a reef over time, with the stated aim of a digital twin of any reef.

    Living systems open sourcepartly open data

  • Yellowfin tool draft

    Robotic surface vehicle from Woods Hole Oceanographic Institution, built by Peter Traykovski and adapted for Anne Cohen's reef work, that photographs shallow coral reefs along GPS-tagged tracks so the same colonies can be checked again after each heat wave.

    Living systemsWater

articles

organizations

  • Amazon.ia organization draft

    Multi-partner initiative, launching in 2026 with founding support from the Bezos Earth Fund, that combines field sensors, environmental DNA and satellite data with AI to report on biodiversity and ecosystem condition across the Amazon.

    Living systems

  • Coastal Assembly organization draft

    Coastal Assembly, a public benefit company out of MIT's Self-Assembly Lab, models how sand moves along a shoreline from satellite, wave, current and seabed data, then places engineered reef structures so that waves rebuild the beach.

    WaterLiving systems

  • GLORIA organization draft

    Long-term monitoring network that resurveys permanent plots on European mountain summits; its 21 years of data underpin a 2026 Science study reporting rising local extinctions of alpine plants.

    Living systemsWeather & climate

  • Platform from Blue Green Future and Global Resilience Partners that helps governments count living nature as part of sovereign wealth; Tonga and Panama are its first partner countries.

    Living systemsWater

digital twins

  • Bay Layers twin proposed

    A layered portrait of San Francisco Bay that explains a digital twin as four shared geographic layers: earth and seabed, natural forces, living systems and the built world.

    Cities & placesWaterLiving systems

  • The Chesapeake Bay Program's web-based watershed model of the Chesapeake Bay, United States; a planner picks an area and management practices and it estimates the resulting nitrogen, phosphorus and sediment loads and their cost.

    WaterLiving systems open datapartly open participation

  • eReefs twin draft

    A modelling and monitoring system for the Great Barrier Reef built by CSIRO, the Australian Institute of Marine Science, the Bureau of Meteorology and the Queensland Government with the Great Barrier Reef Foundation; it simulates water movement, sediment, waves and biogeochemistry from the catchments to the open ocean.

    WaterLiving systems open sourceopen dataAPI

  • The European Commission's digital replica of the ocean, built and run by Mercator Ocean International and the Flanders Marine Institute; a public platform that joins Copernicus Marine and EMODnet data with ocean models and what-if scenario applications.

    WaterLiving systemsWeather & climate open dataopen participation

  • A Horizon 2020 project of 56 partners that builds virtual representations of the sea from earth observation, models and digital infrastructure, and runs a marketplace where digital twins, models and their components are listed and shared.

    WaterLiving systems partly open datapartly open participation

  • A sustainability simulator of the island of Moorea, French Polynesia, led by the IDEA Consortium from the University of California's Gump South Pacific Research Station; it models links between climate, environment, biodiversity and human activity across the island and its lagoon.

    Living systemsCities & placesPeople & society

terms

data sources

  • Bioregioning Earth datasource draft

    Public knowledge base from Andrea Farias and the worker cooperative Motiu, with r3.0, that maps organizations doing bioregional and regenerative work around the world, with a shared vocabulary of themes and tags and a bibliography of sources.

    Living systemsCities & places open participation

  • Densely annotated underwater image datasets of Red Sea coral reefs from EPFL and partners for training segmentation models; V2 adds panoptic labels, 95 classes and fish instances, and is the training data behind DeepReefMap.

    Living systemsSensory landscape open data

  • CTrees 3D Fuels datasource draft

    Lidar-derived model from CTrees of forest fire fuels as one-metre voxels carrying canopy, ladder and ground fuel properties, demonstrated at three US sites and published as open 3D arrays for fire models to read.

    FireLiving systems open data

  • Global Nature Watch datasource draft

    Online platform from the World Resources Institute, until 2026 called Global Forest Watch, that publishes free global data, maps and alerts on forests and is widening its coverage to grasslands, farmland and trees outside forests.

    Living systems open data

  • Global Safety Net v3 datasource draft

    Global map from One Earth and Nature Data Lab of lands and inland waters important for biodiversity, ecosystem services and climate, with land cover and conservation status, designed to be updated every year; launched September 2026 as a free web viewer.

    Living systemsCities & places partly open data

  • iNaturalist datasource draft

    Community platform where people photograph plants, animals and fungi and others identify them; the observations are published as open biodiversity data for research and conservation.

    Living systemsPeople & society open dataopen participation

  • Esri feature service in ArcGIS Living Atlas that serves iNaturalist's research-grade observations worldwide, refreshed monthly, with hexagon summaries at small scales.

    Living systemsCities & places partly open dataAPI

  • NYC Tree Genus Map datasource draft

    Map and dataset from Cornell researchers of about 1.8 million individual tree crowns in New York City classified to genus from PlanetScope satellite imagery and airborne lidar, including trees on private land and in natural areas; published August 2026.

    Living systemsWeather & climate open sourceopen data

  • Orcapelago datasource draft

    Web map of orca and other whale sightings in the Salish Sea, placed on the map from the narrative reports in Orca Network newsletters.

    Living systems open dataAPI

  • Protected Planet datasource draft

    UNEP-WCMC's record of the world's protected areas and other effective area-based conservation measures, the World Database on Protected Areas, updated monthly from government and other submissions and downloadable from the site.

    Living systemsCities & places open datapartly open participation

  • Protecting Blue Corridors datasource draft

    Web map from WWF and partners of whale migration routes built from pooled satellite telemetry, with threat and protection layers alongside; free to browse at bluecorridors.org.

    Living systems partly open datapartly open participation

events

Symbol: "biodiversity" by Ali Khamdan, Noun Project, CC BY 3.0.

staging: drafts and proposals shown